PalmPred
An SVM Based Method for Palmitoylated Peptide Prediction
ABOUT PREDICTION HOW TO USE TEAM DOWNLOADS
    PalmPred identifies palmitoylated cysteine residues in a protein sequence. Therefore users are requested to submit the protein sequence with at least one cysteine residue. The example of input sequence is given below:
  • EXAMPLE
    >Q9UP65
    MGSSEVSIIPGLQKEEKAAVERRRLHVLKALKKLRIEADEAPVVAVLGSGGGLRAHIACL
    GVLSEMKEQGLLDAVTYLAGVSGSTWAISSLYTNDGDMEALEADLKHRFTRQEWDLAKSL
    QKTIQAARSENYSLTDFWAYMVISKQTRELPESHLSNMKKPVEEGTLPYPIFAAIDNDLQ
    PSWQEARAPETWFEFTPHHAGFSALGAFVSITHFGSKFKKGRLVRTHPERDLTFLRGLWG
    SALGNTEVIREYIFDQLRNLTLKGLWRRAVANAKSIGHLIFARLLRLQESSQGEHPPPED
    EGGEPEHTWLTEMLENWTRTSLEKQEQPHEDPERKGSLSNLMDFVKKTGICASKWEWGTT
    HNFLYKHGGIRDKIMSSRKHLHLVDAGLAINTPFPLVLPPTREVHLILSFDFSAGDPFET
    IRATTDYCRRHKIPFPQVEEAELDLWSKAPASCYILKGETGPVVMHFPLFNIDACGGDIE
    AWSDTYDTFKLADTYTLDVVVLLLALAKKNVRENKKKILRELMNVAGLYYPKDSARSCCL
    A
    PalmPred users have a choise to select probability score for False Positive Rate (FPR). The performance of PalmPred at different FPR is described under the section 'ABOUT'.
  • Understanding PalmPred Result
    The PalmPred will provide you result as follows.
  • NOTE
    Users are requested to restrict the protein name up to a maximum of 6 characters.
    Users intersted in prediction of cys-palmitoyl region for a large number of proteins are encouraged to download standalone of Palmpred instead of using PalmPred web-server.
Citing PalmPred
Kumari B, Kumar R, Kumar M (2014) PalmPred: An SVM based Palmitoylation Prediction Method Using Sequence Profile Information. PLoS ONE 9(2):e89246.
Please address your queries/suggestions/problems to
                    manish{at}south.du.ac.in