CrAgDb
Chaperone Repertoire in Archaeal Genomes
References
Sequenced Genomes
Anderson I,Gker M, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R,Han C, Goodwin L, Pitluck S, Huntemann M, Liolios K, Ivanova N, Pagani I,Mavromatis K, Ovchinikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla EM, Huber H, Yasawong M, Rohde M, Spring S, Abt B, Sikorski J, Wirth R, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A). Stand Genomic Sci.2011 Jul 1;4(3):381-92. doi: 10.4056/sigs.2014648. PubMed PMID: 21886865;PubMed Central PMCID: PMC3156397.
Anderson I, Rodriguez J, Susanti D, Porat I, Reich C, Ulrich LE, Elkins JG, Mavromatis K, Lykidis A, Kim E, Thompson LS, Nolan M, Land M, Copeland A, Lapidus A, Lucas S, Detter C, Zhulin IB, Olsen GJ, Whitman W, Mukhopadhyay B, Bristow J,Kyrpides N. Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. J Bacteriol. 2008 Apr;190(8):2957-65. doi: 10.1128/JB.01949-07. Epub 2008 Feb 8. PubMed PMID: 18263724; PubMed Central PMCID: PMC2293246.
Anderson I,Tindall BJ, Rohde M, Lucas S, Han J, Lapidus A, Cheng JF, Goodwin L,Pitluck S, Peters L,Pati A,Mikhailova N, Pagani I, Teshima H, Han C,Tapia R, Land M, Woyke T, Klenk HP, Kyrpides N, Ivanova N. Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)). Stand Genomic Sci. 2012 Mar 19;6(1):31-42. doi: 10.4056/sigs.2505605. Epub 2012 Mar 5. PubMed PMID: 22675596; PubMed Central PMCID: PMC3368405.
Anderson IJ, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich LE, Elkins JG, Mavromatis K, Sun H, Land M, Lapidus A, Lucas S, Barry K, Huber H, Zhulin IB, Whitman WB, Mukhopadhyay B, Woese C, Bristow J, Kyrpides N. The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. BMC Genomics. 2009 Apr 2;10:145. doi: 10.1186/1471-2164-10-145. PubMed PMID: 19341479; PubMed Central PMCID: PMC2678158.
Anderson IJ, Sieprawska-Lupa M, Goltsman E, Lapidus A, Copeland A, Glavina Del Rio T, Tice H, Dalin E, Barry K, Pitluck S, Hauser L, Land M, Lucas S, Richardson P, Whitman WB, Kyrpides NC. Complete genome sequence of Methanocorpusculum labreanum type strain Z. Stand Genomic Sci. 2009 Sep 24;1(2):197-203. doi: 10.4056/sigs.35575. PubMed PMID: 21304657; PubMed Central PMCID: PMC3035222.
Anderson IJ, Sieprawska-Lupa M, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T,Tice H, Dalin E, Barry K, Saunders E, Han C, Brettin T, Detter JC, Bruce D, Mikhailova N, Pitluck S, Hauser L, Land M, Lucas S, Richardson P, Whitman WB,Kyrpides NC. Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 typestrain JR1. Stand Genomic Sci. 2009 Sep 25;1(2):189-96. doi: 10.4056/sigs.32535. PubMed PMID: 21304656; PubMed Central PMCID:PMC3035220.
Anderson IJ, Sun H, Lapidus A, Copeland A, Glavina Del Rio T, Tice H, Dalin E,Lucas S, Barry K, Land M, Richardson P, Huber H, Kyrpides NC. Completegenome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1. Stand Genomic Sci. 2009 Sep 25;1(2):183-8. doi: 10.4056/sigs.30527. PubMed PMID: 21304655; PubMed Central PMCID: PMC3035234.
Auernik KS,Maezato Y, Blum PH, Kelly RM. The genome sequence of themetal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism. Appl Environ Microbiol. 2008 Feb;74(3):682-92. Epub 2007 Dec 14. PubMed PMID:18083856; PubMed Central PMCID: PMC2227735.
Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, Shannon P, Chiu Y, Weng RS, Gan RR, Hung P, Date SV, Marcotte E, Hood L, Ng WV. Genomesequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res. 2004 Nov;14(11):2221-34. Erratum in: Genome Res. 2004 Dec;14(12):2510. PubMed PMID: 15520287; PubMed Central PMCID: PMC525680.
Barber RD, Zhang L, Harnack M, Olson MV, Kaul R, Ingram-Smith C, Smith KS. Complete genome sequence of Methanosaeta concilii, a specialist in aceticlastic methanogenesis. J Bacteriol. 2011 Jul;193(14):3668-9. doi: 10.1128/JB.05031-11. Epub 2011 May 13. PubMed PMID: 21571998; PubMed Central PMCID: PMC3133334.
Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR. Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis. PLoS One. 2011 Feb 22;6(2):e16626. doi:10.1371/journal.pone.0016626. PubMed PMID: 21364937; PubMed Central PMCID: PMC3043068.
Bolhuis H, Palm P, Wende A, Falb M, Rampp M, Rodriguez-Valera F, Pfeiffer F,Oesterhelt D. The genome of the square archaeon Haloquadratum walsbyi :life at the limits of water activity. BMC Genomics. 2006 Jul 4;7:169.PubMed PMID: 16820047; PubMed Central PMCID: PMC1544339.
BrggerK, Chen L, Stark M, Zibat A, Redder P, Ruepp A, Awayez M, She Q, Garrett RA, Klenk HP. The genome of Hyperthermus butylicus: a sulfur-reducing,peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C. Archaea. 2007 May;2(2):127-35. PubMed PMID: 17350933; PubMed Central PMCID: PMC2686385.
Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, Blake JA, FitzGerald LM, Clayton RA, Gocayne JD, Kerlavage AR, Dougherty BA, Tomb JF, Adams MD, Reich CI, Overbeek R, Kirkness EF, Weinstock KG, Merrick JM, Glodek A, ScottJL, Geoghagen NS, Venter JC. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science. 1996 Aug 23;273(5278):1058-73. PubMed PMID: 8688087.
Chen L, Brgger K, Skovgaard M, Redder P, She Q, Torarinsson E, Greve B, Awayez M,Zibat A, Klenk HP, Garrett RA. The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota. J Bacteriol. 2005 Jul;187(14):4992-9. PubMed PMID: 15995215; PubMed Central PMCID: PMC1169522.
Cohen GN, Barbe V, Flament D, Galperin M, Heilig R, Lecompte O, Poch O, Prieur D,Qurellou J, Ripp R, Thierry JC, Van der Oost J, Weissenbach J, Zivanovic Y, Forterre P. An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi. Mol Microbiol. 2003 Mar;47(6):1495-512. PubMed PMID: 12622808.
Deppenmeier U, Johann A, Hartsch T, Merkl R, Schmitz RA, Martinez-Arias R, Henne A, Wiezer A, Bumer S, Jacobi C, Brggemann H, Lienard T, Christmann A, Bmeke M, Steckel S, Bhattacharyya A, Lykidis A, Overbeek R, Klenk HP,Gunsalus RP, Fritz HJ, Gottschalk G. The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea. J Mol Microbiol Biotechnol. 2002 Jul;4(4):453-61. PubMed PMID: 12125824.
Dyall-Smith ML, Pfeiffer F, Oberwinkler T, Klee K, Rampp M, Palm P, Gross K,Schuster SC, Oesterhelt D. Genome of the haloarchaeon Natronomonas moolapensis, aneutrophilic member of a previously haloalkaliphilic genus. Genome Announc. 2013 Mar 21;1(2):e0009513. doi: 10.1128/genomeA.00095-13. PubMed PMID: 23516216;PubMed Central PMCID: PMC3623002.
ElkinsJG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, Hedlund BP,Brochier-Armanet C, Kunin V, Anderson I, Lapidus A, Goltsman E, Barry K, Koonin EV, Hugenholtz P, Kyrpides N, Wanner G, Richardson P, Keller M,Stetter KO. A korarchaeal genome reveals insights into the evolution of the Archaea. Proc NatlAcad Sci U S A. 2008 Jun 10;105(23):8102-7. doi: 10.1073/pnas.0801980105. Epub 2008 Jun 5.PubMed PMID: 18535141; PubMed Central PMCID: PMC2430366.
Erkel C, Kube M, Reinhardt R, Liesack W. Genome of Rice Cluster I archaea the key methane producers in the rice rhizosphere. Science. 2006 Jul 21;313(5785):370-2. PubMed PMID: 16857943.
Falb M,Pfeiffer F, Palm P, Rodewald K, Hickmann V, Tittor J, Oesterhelt D.Living with two extremes: conclusions from the genome sequence of Natronomonaspharaonis.Genome Res. 2005 Oct; 15(10):1336-43.Epub 2005 Sep 16. PubMed PMID:16169924; PubMed Central PMCID: PMC1240075.
Feng J, Liu B, Zhang Z, Ren Y, Li Y, Gan F, Huang Y, Chen X, Shen P, Wang L,Tang B, Tang XF. The complete genome sequence of Natrinema sp. J7-2, ahaloarchaeon capable of growth on synthetic media without amino acid supplements.PLoS One. 2012;7(7):e41621. doi: 10.1371/journal.pone.0041621.Epub 2012 Jul 23. PubMed PMID: 22911826; PubMed Central PMCID: PMC3402447.
Fitz-Gibbon ST, Ladner H, Kim UJ, Stetter KO, Simon MI, Miller JH. Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum. Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):984-9. Epub 2002 Jan 15. PubMed PMID:11792869; PubMed Central PMCID: PMC117417.
Fricke WF, Seedorf H, Henne A, Krer M, Liesegang H, Hedderich R, Gottschalk G,Thauer RK. The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis. J Bacteriol. 2006 Jan;188(2):642-58.PubMed PMID: 16385054; PubMed Central PMCID: PMC1347301.
Fukui T, Atomi H, Kanai T, Matsumi R, Fujiwara S, Imanaka T. Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes. Genome Res. 2005 Mar;15(3):352-63. Epub 2005 Feb 14. PubMed PMID: 15710748; PubMed Central PMCID: PMC551561.
Galagan JE, Nusbaum C, Roy A, Endrizzi MG, Macdonald P, FitzHugh W, Calvo S, Engels R, Smirnov S, Atnoor D, Brown A, Allen N, Naylor J, Stange-Thomann N, DeArellano K, Johnson R, Linton L, McEwan P, McKernan K, Talamas J,Tirrell A, Ye W, Zimmer A, Barber RD, Cann I, Graham DE, Grahame DA, Guss AM, Hedderich R, Ingram-Smith C, Kuettner HC, Krzycki JA, Leigh JA, Li W, Liu J, Mukhopadhyay B, Reeve JN, Smith K, Springer TA, Umayam LA, White O,White RH, Conway de Macario E, Ferry JG, Jarrell KF, Jing H, Macario AJ,Paulsen I, Pritchett M, Sowers KR, Swanson RV, Zinder SH, Lander E, Metcalf WW, Birren B. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Res. 2002 Apr;12(4):532-42.PubMed PMID: 11932238; PubMed Central PMCID: PMC187521.
Gardner AF, Kumar S, Perler FB. Genome sequence of the model hyperthermophilic archaeon Thermococcus litoralis NS-C. J Bacteriol. 2012 May;194(9):2375-6. doi: 10.1128/JB.00123-12. PubMed PMID: 22493191; PubMed Central PMCID: PMC3347054.
Gumerov VM, Mardanov AV, Beletsky AV, Prokofeva MI, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG. Complete genome sequence of Vulcanisaeta moutnovskia" strain 768-28, a novel member of the hyperthermophilic crenarchaeal genus Vulcanisaeta. J Bacteriol. 2011 May;193(9):2355-6. doi: 10.1128/JB.00237-11. Epub 2011 Mar 11. PubMed PMID: 21398550; PubMed Central PMCID: PMC3133093.
Guo L,Brgger K, Liu C, Shah SA, Zheng H, Zhu Y, Wang S, Lillest l RK, Chen L,Frank J, Prangishvili D, Paulin L, She Q, Huang L, Garrett RA. Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies. J Bacteriol. 2011 Apr;193(7):1672-80. doi: 10.1128/JB.01487-10. Epub 2011 Jan 28. PubMed PMID: 21278296; PubMed Central PMCID: PMC3067641.
Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J,Preston C, de la Torre J, Richardson PM, DeLong EF. Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci U S A. 2006 Nov 28;103(48):18296-301. Epub 2006 Nov 17. PubMed PMID: 17114289; PubMed Central PMCID: PMC1643844.Han J,Zhang F, Hou J, Liu X, Li M, Liu H, Cai L, Zhang B, Chen Y, Zhou J, Hu S,Xiang H. Complete genome sequence of the metabolically versatile halophilic archaeon Haloferax mediterranei, a poly(3-hydroxybutyrate-co-3-hydroxyvalerate) producer. J Bacteriol. 2012 Aug;194(16):4463-4. doi: 10.1128/JB.00880-12. PubMed PMID: 22843593;PubMed Central PMCID: PMC3416209.
Hartman AL, Norais C, Badger JH, Delmas S, Haldenby S, Madupu R, Robinson J,Khouri H, Ren Q, Lowe TM, Maupin-Furlow J, Pohlschroder M, Daniels C,Pfeiffer F, Allers T, Eisen JA. The complete genome sequence of Haloferax volcanii DS2, a model archaeon. PLoS One. 2010 Mar 19;5(3):e9605. doi: 10.1371/journal.pone.0009605. PubMed PMID: 20333302; PubMed Central PMCID: PMC2841640.
Hendrickson EL, Kaul R, Zhou Y, Bovee D, Chapman P, Chung J, Conway de Macario E,Dodsworth JA, Gillett W, Graham DE, Hackett M, Haydock AK, Kang A, Land ML, Levy R, Lie TJ, Major TA, Moore BC, Porat I, Palmeiri A, Rouse G,Saenphimmachak C, Sll D, Van Dien S, Wang T, Whitman WB, Xia Q, Zhang Y, Larimer FW, Olson MV,Leigh JA. Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis. J Bacteriol. 2004 Oct;186(20):6956-69. PubMed PMID: 15466049; PubMed Central PMCID: PMC522202.
Jun X, Lupeng L, Minjuan X, Oger P, Fengping W, Jebbar M, Xiang X. Complete genome sequence of the obligate piezophilic hyperthermophilic archaeon Pyrococcus yayanosii CH1. J Bacteriol. 2011 Aug;193(16):4297-8. doi: 10.1128/JB.05345-11. Epub 2011 Jun 24. PubMed PMID: 21705594; PubMed Central PMCID: PMC3147706.
Jung JH, Holden JF, Seo DH, Park KH, Shin H, Ryu S, Lee JH, Park CS. Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain CL1, isolated from a Paralvinella sp. polychaete worm collected from a hydrothermal vent. J Bacteriol. 2012 Sep;194(17):4769-70. doi: 10.1128/JB.01016-12. PubMed PMID: 22887670; PubMed Central PMCID: PMC3415475.
Jung JH, Lee JH, Holden JF, Seo DH, Shin H, Kim HY, Kim W, Ryu S, Park CS. Complete genome sequence of the hyperthermophilic archaeon Pyrococcus sp.strain ST04, isolated from a deep-sea hydrothermal sulfide chimney on the Juan de Fuca Ridge. J Bacteriol. 2012 Aug;194(16):4434-5. doi: 10.1128/JB.00824-12. PubMed PMID:22843576; PubMed Central PMCID: PMC3416228.
Kawarabayasi Y, Hino Y, Horikawa H, Jin-no K, Takahashi M, Sekine M, Baba S, Ankai A,Kosugi H, Hosoyama A, Fukui S, Nagai Y, Nishijima K, Otsuka R, Nakazawa H, Takamiya M, Kato Y, Yoshizawa T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Aoki K, Masuda S, Yanagii M, Nishimura M, Yamagishi A, Oshima T, Kikuchi H.Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7. DNA Res. 2001 Aug 31;8(4):123-40. PubMed PMID: 11572479.
Kawarabayasi Y, Hino Y, Horikawa H, Yamazaki S, Haikawa Y, Jin-no K, Takahashi M,Sekine M, Baba S, Ankai A, Kosugi H, Hosoyama A, Fukui S, Nagai Y, Nishijima K, Nakazawa H, Takamiya M, Masuda S, Funahashi T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Kikuchi H, et al. Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1. DNA Res. 1999 Apr 30;6(2):83-101, 145-52. PubMed PMID: 10382966.
Kawarabayasi Y, Sawada M, Horikawa H, Haikawa Y, Hino Y, Yamamoto S, Sekine M, Baba S, Kosugi H, Hosoyama A, Nagai Y, Sakai M, Ogura K, Otsuka R, Nakazawa H, Takamiya M, Ohfuku Y, Funahashi T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Aoki K, Kikuchi H. Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3. DNA Res. 1998 Apr 30;5(2):55-76. PubMed PMID: 9679194.
Kim BK, Jung MY, Yu DS, Park SJ, Oh TK, Rhee SK, Kim JF. Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1. J Bacteriol. 2011 Oct;193(19):5539-40. doi: 10.1128/JB.05717-11. PubMed PMID: 21914867; PubMed Central PMCID: PMC3187385.
Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, Dodson RJ, Gwinn M, Hickey EK, Peterson JD, Richardson DL, Kerlavage AR, Graham DE, Kyrpides NC, Fleischmann RD, Quackenbush J, Lee NH, Sutton GG, Gill S, Kirkness EF, Dougherty BA, McKenney K, Adams MD, Loftus B, Peterson S, Reich CI, McNeil LK, Badger JH, Glodek A, Zhou L, Overbeek R, Gocayne JD, Weidman JF, McDonald L, Utterback T, Cotton MD, Spriggs T, Artiach P, Kaine BP, Sykes SM, Sadow PW, D'Andrea KP, Bowman C, Fujii C, Garland SA, Mason TM, Olsen GJ, Fraser CM, Smith HO, Woese CR, Venter JC. The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature. 1997 Nov 27;390(6658):364-70. Erratum in: Nature 1998 Jul 2;394(6688):101. PubMed PMID: 9389475.
Leahy SC, Kelly WJ, Altermann E, Ronimus RS, Yeoman CJ, Pacheco DM, Li D, Kong Z, McTavish S, Sang C, Lambie SC, Janssen PH, Dey D, Attwood GT. The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions. PLoS One. 2010 Jan 28;5(1):e8926. doi: 10.1371/journal.pone.0008926. PubMed PMID: 20126622; PubMed Central PMCID: PMC2812497.
Lee HS, Bae SS, Kim MS, Kwon KK, Kang SG, Lee JH. Complete genome sequence of hyperthermophilic Pyrococcus sp. strain NA2, isolated from a deep-sea hydrothermal vent area. J Bacteriol. 2011 Jul;193(14):3666-7. doi: 10.1128/JB.05150-11. Epub 2011 May 20. PubMed PMID: 21602357; PubMed Central PMCID: PMC3133302.
Lee HS, Kang SG, Bae SS, Lim JK, Cho Y, Kim YJ, Jeon JH, Cha SS, Kwon KK, Kim HT, Park CJ, Lee HW, Kim SI, Chun J, Colwell RR, Kim SJ, Lee JH. The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism. J Bacteriol. 2008 Nov;190(22):7491-9. doi: 10.1128/JB.00746-08. Epub 2008 Sep 12. PubMed PMID: 18790866; PubMed Central PMCID: PMC2576655.
Liesegang H, Kaster AK, Wiezer A, Goenrich M, Wollherr A, Seedorf H, Gottschalk G, Thauer RK. Complete genome sequence of Methanothermobacter marburgensis, a methanoarchaeon model organism. J Bacteriol. 2010 Nov;192(21):5850-1. doi: 10.1128/JB.00844-10. Epub 2010 Aug 27. PubMed PMID: 20802048; PubMed Central PMCID: PMC2953689.
Liu H, Wu Z, Li M, Zhang F, Zheng H, Han J, Liu J, Zhou J, Wang S, Xiang H. Complete genome sequence of Haloarcula hispanica, a Model Haloarchaeon for studying genetics, metabolism, and virus-host interaction. J Bacteriol. 2011 Nov;193(21):6086-7. doi: 10.1128/JB.05953-11. PubMed PMID: 21994921; PubMed Central PMCID: PMC3194904.
Liu LJ, You XY, Zheng H, Wang S, Jiang CY, Liu SJ. Complete genome sequence of Metallosphaera cuprina, a metal sulfide-oxidizing archaeon from a hot spring. J Bacteriol. 2011 Jul;193(13):3387-8. doi: 10.1128/JB.05038-11. Epub 2011 May 6. PubMed PMID: 21551305; PubMed Central PMCID: PMC3133273.
Lü Z, Lu Y. Complete genome sequence of a thermophilic methanogen, Methanocella conradii HZ254, isolated from Chinese rice field soil. J Bacteriol. 2012 May;194(9):2398-9. doi: 10.1128/JB.00207-12. PubMed PMID: 22493204; PubMed Central PMCID: PMC3347084.
Maeder DL, Anderson I, Brettin TS, Bruce DC, Gilna P, Han CS, Lapidus A, Metcalf WW, Saunders E, Tapia R, Sowers KR. The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes. J Bacteriol. 2006 Nov;188(22):7922-31. Epub 2006 Sep 15. Erratum in: J Bacteriol. 2007 Feb;189(4):1488. PubMed PMID: 16980466; PubMed Central PMCID: PMC1636319.
Maeder DL, Weiss RB, Dunn DM, Cherry JL, González JM, DiRuggiero J, Robb FT. Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences. Genetics. 1999 Aug;152(4):1299-305. PubMed PMID: 10430560; PubMed Central PMCID: PMC1460691.
Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Anderson I, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, D'haeseleer P, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Chain P. Complete genome sequence of Halogeometricum borinquense type strain (PR3). Stand Genomic Sci. 2009 Sep 24;1(2):150-9. doi: 10.4056/sigs.23264. PubMed PMID: 21304651; PubMed Central PMCID: PMC3035229.
Mardanov AV, Gumerov VM, Beletsky AV, Prokofeva MI, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG. Complete genome sequence of the thermoacidophilic crenarchaeon Thermoproteus uzoniensis 768-20. J Bacteriol. 2011 Jun;193(12):3156-7. doi: 10.1128/JB.00409-11. Epub 2011 Apr 8. PubMed PMID: 21478349; PubMed Central PMCID: PMC3133184.
Mardanov AV, Gumerov VM, Slobodkina GB, Beletsky AV, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG. Complete genome sequence of strain 1860, a crenarchaeon of the genus Pyrobaculum able to grow with various electron acceptors. J Bacteriol. 2012 Feb;194(3):727-8. doi: 10.1128/JB.06465-11. PubMed PMID: 22247528; PubMed Central PMCID: PMC3264072.
Mardanov AV, Kochetkova TV, Beletsky AV, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG. Complete genome sequence of the hyperthermophilic cellulolytic crenarchaeon "Thermogladius cellulolyticus" 1633. J Bacteriol. 2012 Aug;194(16):4446-7. doi: 10.1128/JB.00894-12. PubMed PMID: 22843584; PubMed Central PMCID: PMC3416258.
Mardanov AV, Ravin NV, Svetlitchnyi VA, Beletsky AV, Miroshnichenko ML, Bonch-Osmolovskaya EA, Skryabin KG. Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis. Appl Environ Microbiol. 2009 Jul;75(13):4580-8. doi: 10.1128/AEM.00718-09. Epub 2009 May 15. PubMed PMID: 19447963; PubMed Central PMCID: PMC2704819.
Mardanov AV, Svetlitchnyi VA, Beletsky AV, Prokofeva MI, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG. The genome sequence of the crenarchaeon Acidilobus saccharovorans supports a new order, Acidilobales, and suggests an important ecological role in terrestrial acidic hot springs. Appl Environ Microbiol. 2010 Aug;76(16):5652-7. doi: 10.1128/AEM.00599-10. Epub 2010 Jun 25. PubMed PMID: 20581186; PubMed Central PMCID: PMC2918975.
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HtpX
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CsaA
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NAC
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PDIases
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