Submit Query Sequence


Usage: Paste your sequence in the text-area or upload a file containing the sequences in FASTA format and press the Run Prediction button.

Sequence(s): (Type/paste your sequences in FASTA format)

Note: Query size is limited to a maximum of 5 protein sequences. If you have more than 5 sequences please download or use the standalone version of tool. If users have submitted more than 10 sequences, it will process only first 5 sequences.
Any other characters inlcuding white spaces will be removed. Tips


Query title (optional)

Input sequence format

OR Upload FASTA file

SVM threshold: Read More about the SVM threshold

Note: If user select high threshold, the false positive prediction will be low and if the user select low threshold, the false positive prediction will be high.

                                                                       Example of fasta format sequence

 

For detailed methodology and further information, please see the tutorial



How to use this tool

BacEffluxPred is a 2-tier prediction method it predict whether your protein sequence contained bacterial efflux conferring antibiotic resistance or not and further it will also classified into associated subfamilies. This web-server can only predict up to 5 sequences at a time and if user gives more than 5 sequences, it will automatically predict only first 5 sequences. For batch prediction kindly refer to the standalone version of BacEffluxPred (Please visit download page)

Citing BacEffluxPred: Pandey D, Kumari B, Singhal N, Kumar M (2020) BacEffluxPred: A two-tier system to predict and categorize bacterial efflux mediated antibiotic resistance proteins. Scientific Reports 10:9287; https://doi.org/10.1038/s41598-020-65981-3